Calculate Cluster Stats — Cluster_Stats_All

Calculates both overall and per sample cell number and percentages per cluster based on orig.ident.

Cluster_Stats_All_Samples(
  seurat_object,
  group.by = "orig.ident",
  order_by_freq = TRUE
)

Arguments

seurat_object: Seurat object name.
group.by: meta data column to classify samples (default = "orig.ident").
order_by_freq: logical, whether the data.frame should be ordered by frequency of identity (default; TRUE), or by cluster/fector order (FALSE).

A data.frame with rows in order of frequency or cluster order

if (FALSE) {
stats <- Cluster_Stats_All_Samples(seurat_object = object, group.by = "orig.ident")
}