Customized DotPlot — DotPlot_scCustom • scCustomize

Code for creating customized DotPlot

DotPlot_scCustom(
  seurat_object,
  features,
  group.by = NULL,
  colors_use = viridis_plasma_dark_high,
  remove_axis_titles = TRUE,
  x_lab_rotate = FALSE,
  y_lab_rotate = FALSE,
  facet_label_rotate = FALSE,
  flip_axes = FALSE,
  ...
)

Arguments

seurat_object: Seurat object name.
features: Features to plot.
group.by: Name of metadata variable (column) to group cells by (for example, orig.ident); default is the current active.ident of the object.
colors_use: specify color palette to used. Default is viridis_plasma_dark_high.
remove_axis_titles: logical. Whether to remove the x and y axis titles. Default = TRUE.
x_lab_rotate: Rotate x-axis labels 45 degrees (Default is FALSE).
y_lab_rotate: Rotate x-axis labels 45 degrees (Default is FALSE).
facet_label_rotate: Rotate facet labels on grouped DotPlots by 45 degrees (Default is FALSE).
flip_axes: whether or not to flip and X and Y axes (Default is FALSE).
...: Extra parameters passed to DotPlot.

Value

A ggplot object

Examples

# \donttest{
library(Seurat)
DotPlot_scCustom(seurat_object = pbmc_small, features = c("CD3E", "CD8", "GZMB", "MS4A1"))
#> Warning: The following features were omitted as they were not found:
#> ℹ CD8
#> Warning: Scaling data with a low number of groups may produce misleading results

# }