Iterate PC Loading Plots — Iterate_PC_Loading_Plots • scCustomize

Plot PC Heatmaps and Dim Loadings for exploratory analysis

Iterate_PC_Loading_Plots(
  seurat_object,
  dims_plot = NULL,
  file_path = NULL,
  name_prefix = NULL,
  file_name = "PC_Loading_Plots",
  return_plots = FALSE
)

Arguments

seurat_object: Seurat object name.
dims_plot: number of PCs to plot (integer). Default is all dims present in PCA.
file_path: directory file path to save file.
name_prefix: prefix for file name (optional).
file_name: suffix for file name. Default is "PC_Loading_Plots".
return_plots: Whether to return the plot list (Default is FALSE). Must assign to environment to save plot list.

Value

A list of plots outputted as pdf

See also

PCHeatmap and VizDimLoadings

Examples

if (FALSE) {
Iterate_PC_Loading_Plots(seurat_object = seurat, dims_plot = 25, file_path = "plots/")
}