Nebulosa Density Plot — Plot_Density

Allow for customization of Nebulosa plot_density. Requires Nebulosa package from Bioconductor.

Plot_Density_Custom(
  seurat_object,
  features,
  joint = FALSE,
  viridis_palette = "magma",
  custom_palette = NULL,
  pt.size = 1,
  aspect_ratio = NULL,
  reduction = NULL,
  combine = TRUE,
  ...
)

Arguments

seurat_object: Seurat object name.
features: Features to plot.
joint: logical. Whether to return joint density plot. Default is FALSE.
viridis_palette: default viridis palette to use (must be one of: "viridis", "magma", "cividis", "inferno", "plasma"). Default is "magma".
custom_palette: non-default color palette to be used in place of default viridis options.
pt.size: Adjust point size for plotting.
aspect_ratio: Control the aspect ratio (y:x axes ratio length). Must be numeric value; Default is NULL.
reduction: Dimensionality Reduction to use (if NULL then defaults to Object default).
combine: Create a single plot? If FALSE, a list with ggplot objects is returned.
...: Extra parameters passed to plot_density.

Value

A ggplot object

Examples

if (FALSE) {
library(Seurat)
Plot_Density_Custom(seurat_object = pbmc_small, features = "CD3E")
}