Nebulosa Joint Density Plot — Plot_Density_Joint

Return only the joint density plot from Nebulosa plot_density function. Requires Nebulosa package from Bioconductor.

Plot_Density_Joint_Only(
  seurat_object,
  features,
  viridis_palette = "magma",
  custom_palette = NULL,
  pt.size = 1,
  aspect_ratio = NULL,
  reduction = NULL,
  ...
)

Arguments

seurat_object: Seurat object name.
features: Features to plot.
viridis_palette: default viridis palette to use (must be one of: "viridis", "magma", "cividis", "inferno", "plasma"). Default is "magma".
custom_palette: non-default color palette to be used in place of default viridis options.
pt.size: Adjust point size for plotting.
aspect_ratio: Control the aspect ratio (y:x axes ratio length). Must be numeric value; Default is NULL.
reduction: Dimensionality Reduction to use (if NULL then defaults to Object default).
...: Extra parameters passed to plot_density.

Value

A ggplot object

Examples

if (FALSE) {
library(Seurat)
Plot_Density_Joint_Only(seurat_object = pbmc_small, features = c("CD8A", "CD3E"))
}